Variant report

Variant	rs73796857
Chromosome Location	chr5:151687037-151687038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs4521459	1.00[AMR][1000 genomes]
rs5009290	1.00[AMR][1000 genomes]
rs55702422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55876908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58468885	1.00[AMR][1000 genomes]
rs59357534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61362109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61543849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61693801	1.00[AMR][1000 genomes]
rs6579930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796856	0.87[AMR][1000 genomes]
rs73796858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796869	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796873	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796882	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796886	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796890	1.00[AMR][1000 genomes]
rs73798514	1.00[AMR][1000 genomes]
rs73798545	1.00[AMR][1000 genomes]
rs7711391	1.00[AMR][1000 genomes]
rs7719359	1.00[AMR][1000 genomes]
rs7733804	1.00[AMR][1000 genomes]
rs7733843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151684200-151687600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151685200-151687600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:151686800-151689600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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