Variant report

Variant	rs58487182
Chromosome Location	chr15:99994095-99994096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99973224..99976448-chr15:99991050..99995157,5	MCF-7	breast:
2	chr15:99986076..99989977-chr15:99992374..99995201,3	K562	blood:
3	chr15:99985824..99988050-chr15:99992595..99995524,2	MCF-7	breast:
4	chr15:99992216..99993719-chr15:99993741..99995434,2	MCF-7	breast:
5	chr15:99993364..99996054-chr15:100076459..100078080,2	MCF-7	breast:
6	chr15:99981180..99982961-chr15:99993073..99995315,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1561865	1.00[EUR][1000 genomes]
rs28397844	1.00[EUR][1000 genomes]
rs57515781	1.00[EUR][1000 genomes]
rs58766255	1.00[EUR][1000 genomes]
rs61117017	1.00[EUR][1000 genomes]
rs61271090	1.00[EUR][1000 genomes]
rs74035734	1.00[EUR][1000 genomes]
rs748567	1.00[EUR][1000 genomes]
rs8029754	1.00[EUR][1000 genomes]
rs8031660	1.00[EUR][1000 genomes]
rs8033502	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99979200-99995800	Enhancers	Fetal Thymus	thymus
2	chr15:99985800-99994600	Enhancers	Fetal Heart	heart
3	chr15:99986800-99996600	Enhancers	Fetal Muscle Leg	muscle
4	chr15:99987600-99994800	Weak transcription	Pancreas	Pancrea
5	chr15:99988000-99996600	Enhancers	Left Ventricle	heart
6	chr15:99989000-99994200	Weak transcription	Hela-S3	cervix
7	chr15:99989000-99994600	Weak transcription	Fetal Kidney	kidney
8	chr15:99989000-99996000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:99990000-99995800	Enhancers	Right Ventricle	heart
10	chr15:99990600-99994600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:99990600-99995800	Enhancers	Esophagus	oesophagus
12	chr15:99990600-99996000	Enhancers	Stomach Mucosa	stomach
13	chr15:99990600-99996400	Enhancers	HUVEC	blood vessel
14	chr15:99990800-99995200	Enhancers	Primary B cells from cord blood	blood
15	chr15:99990800-99995600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:99990800-99995800	Enhancers	Colonic Mucosa	Colon
17	chr15:99990800-99996000	Enhancers	Placenta	Placenta
18	chr15:99990800-99996400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:99990800-99996400	Enhancers	Lung	lung
20	chr15:99990800-99996600	Enhancers	Right Atrium	heart
21	chr15:99991000-99994200	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:99991200-99994800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:99991200-99995800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr15:99991400-99996200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:99991400-99996800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:99991600-99995200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:99991800-99994400	Weak transcription	Fetal Intestine Small	intestine
28	chr15:99991800-99995000	Enhancers	Brain Substantia Nigra	brain
29	chr15:99992000-99994200	Weak transcription	NHEK	skin
30	chr15:99992000-99994600	Weak transcription	Fetal Intestine Large	intestine
31	chr15:99992400-99994600	Bivalent Enhancer	Fetal Stomach	stomach
32	chr15:99992400-99995000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr15:99992600-99995000	Enhancers	Gastric	stomach
34	chr15:99992600-99995000	Enhancers	Osteobl	bone
35	chr15:99992600-99996000	Enhancers	Fetal Lung	lung
36	chr15:99992600-99996000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr15:99992600-99996400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:99992600-99996400	Enhancers	NHLF	lung
39	chr15:99992800-99995200	Enhancers	Brain Cingulate Gyrus	brain
40	chr15:99992800-99995200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr15:99992800-99995400	Enhancers	HMEC	breast
42	chr15:99992800-99995800	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr15:99992800-99996200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:99992800-99996200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:99993000-99994200	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr15:99993000-99994600	Weak transcription	Ovary	ovary
47	chr15:99993400-99994200	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr15:99993400-99994400	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:99993400-99994400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:99993400-99995000	Enhancers	Aorta	Aorta

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