Variant report

Variant	rs61117017
Chromosome Location	chr15:99989672-99989673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99972525..99976931-chr15:99986719..99991606,5	MCF-7	breast:
2	chr15:99986076..99989977-chr15:99992374..99995201,3	K562	blood:
3	chr15:99987398..99990235-chr15:100010575..100012559,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1561865	1.00[EUR][1000 genomes]
rs28397844	1.00[EUR][1000 genomes]
rs57515781	1.00[EUR][1000 genomes]
rs58487182	1.00[EUR][1000 genomes]
rs58766255	1.00[EUR][1000 genomes]
rs61271090	1.00[EUR][1000 genomes]
rs74035734	1.00[EUR][1000 genomes]
rs748567	1.00[EUR][1000 genomes]
rs8029754	1.00[EUR][1000 genomes]
rs8031660	1.00[EUR][1000 genomes]
rs8033502	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv904557	chr15:99956954-99991506	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv519319	chr15:99972661-99991506	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99979200-99995800	Enhancers	Fetal Thymus	thymus
2	chr15:99981200-99990800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr15:99981200-99991000	Enhancers	Primary T cells from cord blood	blood
4	chr15:99982400-99990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:99983400-99991600	Weak transcription	GM12878-XiMat	blood
6	chr15:99983400-99992600	Weak transcription	Fetal Lung	lung
7	chr15:99983400-99993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:99983600-99990800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:99983600-99991800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:99983600-99992800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:99983600-99993200	Weak transcription	Psoas Muscle	Psoas
12	chr15:99984400-99990000	Weak transcription	Brain Anterior Caudate	brain
13	chr15:99984400-99991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:99984400-99992400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr15:99984400-99992600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:99984800-99990800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:99985000-99991200	Weak transcription	Spleen	Spleen
18	chr15:99985200-99990000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:99985600-99990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:99985800-99990000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr15:99985800-99990600	Weak transcription	Adipose Nuclei	Adipose
22	chr15:99985800-99994600	Enhancers	Fetal Heart	heart
23	chr15:99986800-99996600	Enhancers	Fetal Muscle Leg	muscle
24	chr15:99987200-99992800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:99987600-99989800	Weak transcription	NHEK	skin
26	chr15:99987600-99990800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:99987600-99994800	Weak transcription	Pancreas	Pancrea
28	chr15:99987800-99990800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:99987800-99990800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:99988000-99996600	Enhancers	Left Ventricle	heart
31	chr15:99988200-99990600	Weak transcription	Esophagus	oesophagus
32	chr15:99988200-99990800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:99988200-99990800	Weak transcription	Colonic Mucosa	Colon
34	chr15:99988200-99991200	Weak transcription	Brain Germinal Matrix	brain
35	chr15:99988400-99990000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:99988400-99990000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr15:99988400-99990200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:99988400-99990600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:99988600-99990000	Enhancers	Dnd41	blood
40	chr15:99988600-99990800	Weak transcription	Placenta	Placenta
41	chr15:99988600-99990800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:99988600-99991400	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:99988600-99992400	Weak transcription	HSMMtube	muscle
44	chr15:99988800-99990000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:99988800-99990800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:99988800-99993400	Weak transcription	Aorta	Aorta
47	chr15:99989000-99990000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:99989000-99990000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:99989000-99990000	Weak transcription	Right Ventricle	heart
50	chr15:99989000-99990200	Weak transcription	Primary T cells fromperipheralblood	blood

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