Variant report

Variant	rs58499424
Chromosome Location	chr6:120328102-120328103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1028961	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11153850	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12526302	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12528425	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1751882	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17557428	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17557498	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17636773	0.81[EUR][1000 genomes]
rs17637543	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2357764	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35511616	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4945653	0.83[EUR][1000 genomes]
rs505838	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs547922	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55673748	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55928287	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052650	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074031	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198187	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217823	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56320026	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363464	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283891	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57334041	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579071	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58870997	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59614059	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61328226	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66531327	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66631049	0.83[EUR][1000 genomes]
rs66665303	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66912712	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67106263	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67457989	0.83[EUR][1000 genomes]
rs67618941	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67620102	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67658298	0.83[EUR][1000 genomes]
rs68027538	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs724554	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs726178	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72952828	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72952889	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72954710	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72954771	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746191	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761121	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489858	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489859	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489860	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979327	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886573	chr6:120284480-120409492	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886574	chr6:120314863-120409492	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464031	chr6:120314863-120424885	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv604561	chr6:120314863-120424885	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120327800-120328200	Flanking Active TSS	HepG2	liver

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