Variant report

Variant	rs4945653
Chromosome Location	chr6:120215793-120215794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120214425..120217294-chr6:120219373..120221684,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1028961	0.91[EUR][1000 genomes]
rs11153850	0.91[EUR][1000 genomes]
rs12526302	0.85[EUR][1000 genomes]
rs12528425	0.91[EUR][1000 genomes]
rs1330110	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411340	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17081699	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1751882	0.89[EUR][1000 genomes]
rs17555372	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17557428	0.85[EUR][1000 genomes]
rs17557498	0.86[EUR][1000 genomes]
rs17636773	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17637543	0.86[EUR][1000 genomes]
rs2357764	0.82[EUR][1000 genomes]
rs2884262	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35511616	0.85[EUR][1000 genomes]
rs4945651	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505838	0.91[EUR][1000 genomes]
rs547922	0.91[EUR][1000 genomes]
rs55673748	0.91[EUR][1000 genomes]
rs55928287	0.83[EUR][1000 genomes]
rs56052650	0.84[EUR][1000 genomes]
rs56074031	0.84[EUR][1000 genomes]
rs56198187	0.84[EUR][1000 genomes]
rs56217823	0.84[EUR][1000 genomes]
rs56320026	0.84[EUR][1000 genomes]
rs56363464	0.84[EUR][1000 genomes]
rs57283891	0.84[EUR][1000 genomes]
rs57334041	0.84[EUR][1000 genomes]
rs579071	0.91[EUR][1000 genomes]
rs58499424	0.83[EUR][1000 genomes]
rs58870997	0.84[EUR][1000 genomes]
rs58933114	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59614059	0.84[EUR][1000 genomes]
rs61328226	0.84[EUR][1000 genomes]
rs66531327	0.85[EUR][1000 genomes]
rs66631049	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66665303	0.84[EUR][1000 genomes]
rs66912712	0.85[EUR][1000 genomes]
rs67106263	0.83[EUR][1000 genomes]
rs67457989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67618941	0.83[EUR][1000 genomes]
rs67620102	0.87[EUR][1000 genomes]
rs67658298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68027538	0.85[EUR][1000 genomes]
rs724554	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs726178	0.85[EUR][1000 genomes]
rs72952828	0.91[EUR][1000 genomes]
rs72952889	0.82[EUR][1000 genomes]
rs72954710	0.85[EUR][1000 genomes]
rs72954771	0.84[EUR][1000 genomes]
rs72969189	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746191	0.83[EUR][1000 genomes]
rs7761121	0.84[EUR][1000 genomes]
rs7761455	0.95[CEU][hapmap]
rs885221	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489858	0.84[EUR][1000 genomes]
rs9489859	0.82[EUR][1000 genomes]
rs9489860	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs951599	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979327	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2830171	chr6:120200969-120233977	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120212000-120216800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:120212200-120215800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:120212600-120216600	Weak transcription	Placenta	Placenta
4	chr6:120212600-120216800	Weak transcription	NHEK	skin
5	chr6:120215400-120216800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:120215600-120216800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:120215600-120218200	Enhancers	Fetal Heart	heart
8	chr6:120215600-120218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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