Variant report

Variant	rs17081699
Chromosome Location	chr6:120191898-120191899
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120185120..120186939-chr6:120191619..120193219,2	K562	blood:
2	chr6:120191192..120193636-chr6:120195105..120196665,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1028961	0.85[EUR][1000 genomes]
rs11153850	0.85[EUR][1000 genomes]
rs12526302	0.81[EUR][1000 genomes]
rs12528425	0.85[EUR][1000 genomes]
rs1330110	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411340	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1751882	0.83[EUR][1000 genomes]
rs17555372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17557428	0.81[EUR][1000 genomes]
rs17557498	0.82[EUR][1000 genomes]
rs17636773	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17637543	0.81[EUR][1000 genomes]
rs2884262	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35511616	0.81[EUR][1000 genomes]
rs4945651	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945652	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945653	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505838	0.85[EUR][1000 genomes]
rs547922	0.85[EUR][1000 genomes]
rs55673748	0.85[EUR][1000 genomes]
rs579071	0.84[EUR][1000 genomes]
rs58933114	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66531327	0.80[EUR][1000 genomes]
rs66631049	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66912712	0.81[EUR][1000 genomes]
rs67457989	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67620102	0.82[EUR][1000 genomes]
rs67658298	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68027538	0.81[EUR][1000 genomes]
rs724554	0.81[EUR][1000 genomes]
rs726178	0.81[EUR][1000 genomes]
rs72952828	0.85[EUR][1000 genomes]
rs72954710	0.81[EUR][1000 genomes]
rs72969189	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs885221	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs951599	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120187200-120201800	Weak transcription	HMEC	breast

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