Variant report

Variant	rs4945651
Chromosome Location	chr6:120184089-120184090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120182037..120184680-chr6:120189495..120191539,2	MCF-7	breast:
2	chr6:120165311..120167108-chr6:120183604..120186409,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1028961	0.85[EUR][1000 genomes]
rs11153850	0.85[EUR][1000 genomes]
rs12526302	0.81[EUR][1000 genomes]
rs12528425	0.85[EUR][1000 genomes]
rs1330110	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411340	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17081699	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1751882	0.83[EUR][1000 genomes]
rs17555372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17557428	0.81[EUR][1000 genomes]
rs17557498	0.82[EUR][1000 genomes]
rs17636773	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17637543	0.81[EUR][1000 genomes]
rs2884262	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35511616	0.81[EUR][1000 genomes]
rs4945652	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945653	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505838	0.85[EUR][1000 genomes]
rs547922	0.85[EUR][1000 genomes]
rs55673748	0.85[EUR][1000 genomes]
rs579071	0.84[EUR][1000 genomes]
rs58933114	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66531327	0.80[EUR][1000 genomes]
rs66631049	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66912712	0.81[EUR][1000 genomes]
rs67457989	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67620102	0.82[EUR][1000 genomes]
rs67658298	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68027538	0.81[EUR][1000 genomes]
rs724554	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs726178	0.81[EUR][1000 genomes]
rs72952828	0.85[EUR][1000 genomes]
rs72954710	0.81[EUR][1000 genomes]
rs72969189	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761455	0.94[CEU][hapmap]
rs885221	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489860	0.85[CEU][hapmap]
rs951599	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120182400-120185200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:120183800-120184200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:120183800-120187200	Enhancers	NHEK	skin
4	chr6:120184000-120184200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:120184000-120185000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:120184000-120186000	Enhancers	HMEC	breast

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