Variant report

Variant	rs58500453
Chromosome Location	chr11:119781867-119781868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56992224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59263058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579074	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939953	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
2	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
3	chr11:119778200-119783200	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:119778400-119783000	Enhancers	Brain Hippocampus Middle	brain
5	chr11:119778400-119783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:119778400-119783200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:119778600-119782200	Enhancers	Fetal Intestine Large	intestine
8	chr11:119778800-119782000	Enhancers	Brain Substantia Nigra	brain
9	chr11:119779400-119782000	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:119779400-119782000	Enhancers	Fetal Intestine Small	intestine
11	chr11:119779600-119782800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:119779800-119784600	Weak transcription	Esophagus	oesophagus
13	chr11:119780000-119786800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:119780000-119792000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:119780400-119782200	Enhancers	Gastric	stomach
16	chr11:119780400-119782800	Enhancers	Left Ventricle	heart
17	chr11:119780800-119782000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:119780800-119782000	Enhancers	Right Ventricle	heart
19	chr11:119781400-119782000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:119781400-119782000	Enhancers	Psoas Muscle	Psoas
21	chr11:119781800-119783000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:119781800-119784200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:119781800-119786000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:119781800-119786600	Weak transcription	Colonic Mucosa	Colon
25	chr11:119781800-119789000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:119781800-119801800	Weak transcription	Stomach Mucosa	stomach

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