Variant report

Variant	rs73579074
Chromosome Location	chr11:119790481-119790482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56992224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58500453	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59263058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939953	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1049086	chr11:119782056-119808864	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119780000-119792000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119781800-119801800	Weak transcription	Stomach Mucosa	stomach
3	chr11:119782800-119800600	Weak transcription	Gastric	stomach
4	chr11:119789000-119790600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:119789400-119791800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:119789800-119791200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:119790000-119793000	Weak transcription	Fetal Heart	heart
8	chr11:119790200-119792000	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:119790200-119792200	Enhancers	Brain Angular Gyrus	brain
10	chr11:119790400-119791600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:119790400-119791600	Enhancers	Brain Anterior Caudate	brain
12	chr11:119790400-119791800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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