Variant report

Variant	rs58500515
Chromosome Location	chr8:52043627-52043628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs58535627	1.00[AMR][1000 genomes]
rs60902678	1.00[AMR][1000 genomes]
rs61443409	1.00[AMR][1000 genomes]
rs6992320	1.00[AMR][1000 genomes]
rs6994148	1.00[AMR][1000 genomes]
rs7011456	1.00[AMR][1000 genomes]
rs73571902	1.00[AMR][1000 genomes]
rs73571924	1.00[AMR][1000 genomes]
rs73573815	1.00[AMR][1000 genomes]
rs73573886	1.00[AMR][1000 genomes]
rs73573893	1.00[AMR][1000 genomes]
rs73573897	1.00[AMR][1000 genomes]
rs73573901	1.00[AMR][1000 genomes]
rs73577617	1.00[AMR][1000 genomes]
rs73577619	1.00[AMR][1000 genomes]
rs73577620	1.00[AMR][1000 genomes]
rs73577621	1.00[AMR][1000 genomes]
rs73577623	1.00[AMR][1000 genomes]
rs73583865	1.00[AFR][1000 genomes]
rs7828447	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1031155	chr8:51907530-52173218	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1028519	chr8:52038750-52076383	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv611352	chr8:52042419-52076217	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52043200-52043800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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