Variant report

Variant	rs58535627
Chromosome Location	chr8:52189605-52189606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52189412..52191198-chr8:52195033..52197163,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10093325	1.00[AMR][1000 genomes]
rs10099947	1.00[AMR][1000 genomes]
rs10282900	1.00[AMR][1000 genomes]
rs58500515	1.00[AMR][1000 genomes]
rs59313662	1.00[AMR][1000 genomes]
rs59625467	1.00[AMR][1000 genomes]
rs59774513	1.00[AMR][1000 genomes]
rs59882925	1.00[AMR][1000 genomes]
rs60820519	1.00[AMR][1000 genomes]
rs60902678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61134940	1.00[AMR][1000 genomes]
rs61305961	1.00[AMR][1000 genomes]
rs61443409	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989113	1.00[AMR][1000 genomes]
rs6990005	1.00[AMR][1000 genomes]
rs6992320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7011456	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571924	1.00[AMR][1000 genomes]
rs73573815	1.00[AMR][1000 genomes]
rs73573886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577623	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577680	1.00[AMR][1000 genomes]
rs73577701	1.00[AMR][1000 genomes]
rs73579639	1.00[AMR][1000 genomes]
rs73579644	1.00[AMR][1000 genomes]
rs73579645	1.00[AMR][1000 genomes]
rs73579656	1.00[AMR][1000 genomes]
rs73579662	1.00[AMR][1000 genomes]
rs73579671	1.00[AMR][1000 genomes]
rs73579673	1.00[AMR][1000 genomes]
rs73579675	1.00[AMR][1000 genomes]
rs73579680	1.00[AMR][1000 genomes]
rs73579682	1.00[AMR][1000 genomes]
rs73579687	1.00[AMR][1000 genomes]
rs73581425	1.00[AMR][1000 genomes]
rs73581432	1.00[AMR][1000 genomes]
rs7832682	1.00[AMR][1000 genomes]
rs9785122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv6189	chr8:52145834-52191132	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv982149	chr8:52185110-52191544	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3584889	chr8:52188402-52197148	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52184200-52197800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:52188000-52191200	Enhancers	Fetal Brain Male	brain
3	chr8:52188200-52191200	Enhancers	Brain Germinal Matrix	brain
4	chr8:52188800-52191200	Enhancers	Fetal Brain Female	brain
5	chr8:52189200-52190800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:52189400-52190200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:52189400-52190400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:52189400-52190400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:52189600-52189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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