Variant report

Variant	rs73577701
Chromosome Location	chr8:52246239-52246240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10093325	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099947	1.00[AMR][1000 genomes]
rs10105724	0.92[AFR][1000 genomes]
rs10108597	1.00[AMR][1000 genomes]
rs10282900	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1318142	1.00[AMR][1000 genomes]
rs2217524	1.00[AMR][1000 genomes]
rs2915506	1.00[AMR][1000 genomes]
rs2979115	1.00[AMR][1000 genomes]
rs56804147	1.00[AMR][1000 genomes]
rs57492114	1.00[AMR][1000 genomes]
rs58535627	1.00[AMR][1000 genomes]
rs58900486	1.00[AMR][1000 genomes]
rs59179309	1.00[AMR][1000 genomes]
rs59313662	1.00[AMR][1000 genomes]
rs59625467	1.00[AMR][1000 genomes]
rs59713862	1.00[AMR][1000 genomes]
rs59774513	1.00[AMR][1000 genomes]
rs59882925	1.00[AMR][1000 genomes]
rs59972649	1.00[AMR][1000 genomes]
rs60820519	1.00[AMR][1000 genomes]
rs60902678	1.00[AMR][1000 genomes]
rs61134940	1.00[AMR][1000 genomes]
rs61305961	1.00[AMR][1000 genomes]
rs61336437	1.00[AMR][1000 genomes]
rs61443409	1.00[AMR][1000 genomes]
rs6989113	1.00[AMR][1000 genomes]
rs6990005	1.00[AMR][1000 genomes]
rs6992320	1.00[AMR][1000 genomes]
rs7011456	1.00[AMR][1000 genomes]
rs7013608	1.00[AMR][1000 genomes]
rs73571924	1.00[AMR][1000 genomes]
rs73573815	1.00[AMR][1000 genomes]
rs73573886	1.00[AMR][1000 genomes]
rs73573893	1.00[AMR][1000 genomes]
rs73573897	1.00[AMR][1000 genomes]
rs73573901	1.00[AMR][1000 genomes]
rs73577617	1.00[AMR][1000 genomes]
rs73577619	1.00[AMR][1000 genomes]
rs73577620	1.00[AMR][1000 genomes]
rs73577621	1.00[AMR][1000 genomes]
rs73577623	1.00[AMR][1000 genomes]
rs73577678	1.00[AMR][1000 genomes]
rs73577680	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579639	1.00[AMR][1000 genomes]
rs73579644	1.00[AMR][1000 genomes]
rs73579645	1.00[AMR][1000 genomes]
rs73579656	1.00[AMR][1000 genomes]
rs73579662	1.00[AMR][1000 genomes]
rs73579671	1.00[AMR][1000 genomes]
rs73579673	1.00[AMR][1000 genomes]
rs73579675	1.00[AMR][1000 genomes]
rs73579680	1.00[AMR][1000 genomes]
rs73579682	1.00[AMR][1000 genomes]
rs73579687	1.00[AMR][1000 genomes]
rs73581425	1.00[AMR][1000 genomes]
rs73581432	1.00[AMR][1000 genomes]
rs73583005	1.00[AMR][1000 genomes]
rs73583068	1.00[AMR][1000 genomes]
rs73583070	1.00[AMR][1000 genomes]
rs73583076	1.00[AMR][1000 genomes]
rs73583082	1.00[AMR][1000 genomes]
rs73583096	1.00[AMR][1000 genomes]
rs7832682	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9785122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52245000-52246400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:52245000-52258600	Weak transcription	Left Ventricle	heart

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