Variant report

Variant	rs58506630
Chromosome Location	chr11:74410805-74410806
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17133262	1.00[AMR][1000 genomes]
rs17133308	1.00[AMR][1000 genomes]
rs17133314	1.00[AMR][1000 genomes]
rs554658	1.00[ASN][1000 genomes]
rs60072264	1.00[AMR][1000 genomes]
rs61894782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74406800-74411000	Enhancers	Pancreas	Pancrea
2	chr11:74407000-74411200	Enhancers	Spleen	Spleen
3	chr11:74407000-74412800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:74407600-74421400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:74408400-74411200	Enhancers	Fetal Muscle Trunk	muscle
6	chr11:74408400-74413600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:74408600-74416200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:74408800-74411000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:74408800-74413400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:74409000-74411200	Enhancers	Hela-S3	cervix
11	chr11:74409000-74411800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:74409000-74412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:74409000-74412200	Weak transcription	Right Ventricle	heart
14	chr11:74409000-74412200	Weak transcription	K562	blood
15	chr11:74409000-74413200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:74409000-74413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:74409000-74413800	Weak transcription	Fetal Heart	heart
18	chr11:74409000-74418800	Weak transcription	Ovary	ovary
19	chr11:74409000-74421400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:74409000-74421400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:74409000-74421400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:74409000-74421600	Weak transcription	Right Atrium	heart
23	chr11:74409600-74411000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:74409600-74413400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:74410000-74411000	Enhancers	HSMMtube	muscle
26	chr11:74410000-74411200	Enhancers	A549	lung
27	chr11:74410200-74413400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:74410400-74413400	Weak transcription	Fetal Stomach	stomach
29	chr11:74410600-74411000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:74410600-74411200	Enhancers	Osteobl	bone
31	chr11:74410600-74413400	Weak transcription	Placenta	Placenta
32	chr11:74410800-74411000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:74410800-74411200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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