Variant report

Variant	rs61894782
Chromosome Location	chr11:74534266-74534267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs554658	1.00[ASN][1000 genomes]
rs58506630	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
6	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74502800-74545600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:74503200-74537800	Weak transcription	Pancreas	Pancrea
3	chr11:74504400-74534600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:74509800-74534600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:74520600-74534400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:74520600-74534800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr11:74520800-74537800	Weak transcription	Colonic Mucosa	Colon
8	chr11:74524800-74535800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:74525400-74534400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:74526400-74534400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:74527200-74534800	Strong transcription	Fetal Intestine Large	intestine
12	chr11:74527800-74534400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:74527800-74534600	Strong transcription	Fetal Muscle Trunk	muscle
14	chr11:74527800-74534800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
16	chr11:74528400-74535000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:74528400-74535600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:74528800-74537800	Weak transcription	Lung	lung
19	chr11:74529800-74537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:74530000-74534600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:74530000-74536400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:74530200-74534800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:74530200-74535400	Weak transcription	Fetal Brain Female	brain
24	chr11:74530200-74535800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:74530400-74534400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:74530400-74534600	Enhancers	HUVEC	blood vessel
27	chr11:74530400-74537600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:74530600-74534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:74530600-74536800	Weak transcription	Placenta	Placenta
30	chr11:74530800-74535200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:74531600-74542400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:74531800-74540800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:74532000-74534400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:74532000-74534400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:74532000-74535400	Weak transcription	HSMM	muscle
36	chr11:74532000-74537200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:74532000-74538000	Weak transcription	Hela-S3	cervix
38	chr11:74532200-74537000	Weak transcription	Fetal Thymus	thymus
39	chr11:74532200-74537400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:74532200-74537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:74532200-74537800	Weak transcription	HMEC	breast
42	chr11:74532400-74534800	Weak transcription	NHEK	skin
43	chr11:74532600-74534400	Enhancers	NHLF	lung
44	chr11:74532600-74541000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:74532800-74534400	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr11:74532800-74536000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr11:74532800-74538200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:74533000-74534400	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:74533000-74534400	Enhancers	NHDF-Ad	bronchial
50	chr11:74533000-74534800	Genic enhancers	Fetal Stomach	stomach

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