Variant report

Variant	rs58507825
Chromosome Location	chr12:106124485-106124486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106123113..106125890-chr12:106127769..106130574,2	MCF-7	breast:
2	chr12:106122688..106125088-chr12:106125191..106126814,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55701064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55712943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55714319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55991033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58931652	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60038102	0.83[AMR][1000 genomes]
rs60920224	0.83[AMR][1000 genomes]
rs61131559	0.81[AFR][1000 genomes]
rs73397326	1.00[AMR][1000 genomes]
rs73397340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397341	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397370	0.83[AMR][1000 genomes]
rs73399332	0.83[AMR][1000 genomes]
rs73399335	0.83[AMR][1000 genomes]
rs73399339	0.83[AMR][1000 genomes]
rs73399342	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv899503	chr12:106021477-106175903	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047810	chr12:106067049-106246582	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1040261	chr12:106068992-106246582	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv899504	chr12:106095906-106135942	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106123000-106127400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:106123200-106127600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106123400-106126000	Enhancers	HSMM	muscle
4	chr12:106124000-106127400	Enhancers	HSMMtube	muscle
5	chr12:106124200-106125400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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