Variant report

Variant	rs60038102
Chromosome Location	chr12:106145356-106145357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55701064	0.83[AMR][1000 genomes]
rs55712943	0.83[AMR][1000 genomes]
rs55714319	0.83[AMR][1000 genomes]
rs55991033	0.83[AMR][1000 genomes]
rs56122277	0.83[AMR][1000 genomes]
rs58507825	0.83[AMR][1000 genomes]
rs60920224	1.00[AMR][1000 genomes]
rs73397326	0.83[AMR][1000 genomes]
rs73397340	0.83[AMR][1000 genomes]
rs73397341	0.83[AMR][1000 genomes]
rs73397343	0.83[AMR][1000 genomes]
rs73397345	0.83[AMR][1000 genomes]
rs73397346	0.83[AMR][1000 genomes]
rs73397349	0.83[AMR][1000 genomes]
rs73397350	0.83[AMR][1000 genomes]
rs73397351	0.83[AMR][1000 genomes]
rs73397353	0.83[AMR][1000 genomes]
rs73397356	0.83[AMR][1000 genomes]
rs73397357	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv899503	chr12:106021477-106175903	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047810	chr12:106067049-106246582	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1040261	chr12:106068992-106246582	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106139400-106147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:106144000-106145800	Weak transcription	Aorta	Aorta
3	chr12:106144200-106147800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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