Variant report

Variant	rs58521095
Chromosome Location	chr7:98614222-98614223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98612577..98614691-chr7:98619408..98621203,2	MCF-7	breast:
2	chr7:98609840..98612132-chr7:98613035..98614695,2	K562	blood:
3	chr7:98609693..98611937-chr7:98613589..98616987,3	K562	blood:

Variant related genes	Relation type
ENSG00000242687	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56031804	1.00[AMR][1000 genomes]
rs56350018	1.00[AMR][1000 genomes]
rs57974063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58427215	1.00[AMR][1000 genomes]
rs59459375	1.00[AMR][1000 genomes]
rs59466550	1.00[AFR][1000 genomes]
rs59481990	1.00[AFR][1000 genomes]
rs73709534	1.00[AMR][1000 genomes]
rs73709538	1.00[AFR][1000 genomes]
rs73711443	1.00[AFR][1000 genomes]
rs73711449	1.00[AMR][1000 genomes]
rs73711452	1.00[AMR][1000 genomes]
rs73711460	1.00[AMR][1000 genomes]
rs73711463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:98529400-98614800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:98529600-98614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:98529600-98614600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:98584000-98614600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:98584600-98614600	Strong transcription	Fetal Muscle Leg	muscle
12	chr7:98584800-98618400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:98585600-98614600	Strong transcription	Fetal Stomach	stomach
14	chr7:98587600-98620200	Strong transcription	Fetal Thymus	thymus
15	chr7:98595000-98615400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:98595600-98614800	Strong transcription	Osteobl	bone
17	chr7:98596800-98614600	Strong transcription	Fetal Intestine Large	intestine
18	chr7:98597400-98614800	Strong transcription	Fetal Lung	lung
19	chr7:98600000-98614600	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr7:98600800-98614600	Strong transcription	Brain Anterior Caudate	brain
21	chr7:98602000-98614800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:98602200-98614600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:98604200-98627000	Weak transcription	Fetal Heart	heart
24	chr7:98604800-98617200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:98604800-98627000	Weak transcription	Fetal Brain Male	brain
26	chr7:98605800-98614400	Strong transcription	HSMM	muscle
27	chr7:98606000-98614800	Strong transcription	A549	lung
28	chr7:98607200-98614600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:98607200-98629200	Weak transcription	Psoas Muscle	Psoas
30	chr7:98608800-98617200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:98610200-98625400	Weak transcription	Small Intestine	intestine
32	chr7:98610400-98617200	Weak transcription	Stomach Mucosa	stomach
33	chr7:98610600-98614600	Strong transcription	Primary hematopoietic stem cells	blood
34	chr7:98611400-98617600	Weak transcription	HMEC	breast
35	chr7:98611800-98617000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:98612000-98627800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:98612200-98614600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:98612400-98617400	Weak transcription	Colon Smooth Muscle	Colon
39	chr7:98612400-98617600	Weak transcription	Aorta	Aorta
40	chr7:98612400-98619400	Weak transcription	Brain Substantia Nigra	brain
41	chr7:98612400-98619800	Weak transcription	Colonic Mucosa	Colon
42	chr7:98612400-98627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr7:98612400-98632000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:98612600-98625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:98612600-98627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:98612800-98617200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:98612800-98617200	Weak transcription	NHLF	lung
48	chr7:98612800-98618000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr7:98612800-98626400	Weak transcription	Brain Angular Gyrus	brain
50	chr7:98613000-98617400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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