Variant report

Variant	rs73709538
Chromosome Location	chr7:98687910-98687911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98676065..98678383-chr7:98685350..98688262,2	MCF-7	breast:
2	chr7:98686720..98688232-chr7:98923277..98925043,2	MCF-7	breast:
3	chr7:98674124..98676078-chr7:98687673..98689400,2	K562	blood:
4	chr7:98686865..98690121-chr7:98692505..98695831,3	MCF-7	breast:
5	chr7:98685529..98691307-chr7:98694168..98698506,8	K562	blood:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28533791	1.00[AMR][1000 genomes]
rs57726665	1.00[AMR][1000 genomes]
rs57974063	1.00[AFR][1000 genomes]
rs58095534	1.00[AMR][1000 genomes]
rs58521095	1.00[AFR][1000 genomes]
rs59466550	1.00[AFR][1000 genomes]
rs59481990	1.00[AFR][1000 genomes]
rs73709621	1.00[AMR][1000 genomes]
rs73711463	1.00[AFR][1000 genomes]
rs73711468	1.00[AFR][1000 genomes]
rs73711469	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
3	chr7:98676600-98702200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:98677000-98689000	Weak transcription	Gastric	stomach
5	chr7:98677000-98690000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:98677000-98693400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:98677000-98693400	Weak transcription	Aorta	Aorta
8	chr7:98677000-98693600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr7:98677000-98694800	Weak transcription	Fetal Intestine Small	intestine
10	chr7:98677000-98696200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:98677000-98696200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:98677000-98700000	Weak transcription	HSMM	muscle
13	chr7:98677200-98688600	Weak transcription	Placenta	Placenta
14	chr7:98677200-98688600	Weak transcription	NHEK	skin
15	chr7:98677200-98688800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:98677200-98689400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:98677200-98690200	Weak transcription	Lung	lung
18	chr7:98677200-98692000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:98677200-98693400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:98677200-98705400	Weak transcription	Fetal Thymus	thymus
21	chr7:98677600-98693400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:98677600-98693600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:98678800-98689400	Weak transcription	Right Atrium	heart
24	chr7:98678800-98693400	Weak transcription	Left Ventricle	heart
25	chr7:98678800-98700000	Weak transcription	HUVEC	blood vessel
26	chr7:98679000-98693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:98679200-98689000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:98681400-98688000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:98681600-98688400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:98681600-98688400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:98681600-98693200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:98681600-98693800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:98681800-98688000	Weak transcription	Stomach Mucosa	stomach
34	chr7:98681800-98688400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:98681800-98688800	Weak transcription	Fetal Stomach	stomach
36	chr7:98681800-98689000	Weak transcription	NHLF	lung
37	chr7:98681800-98690000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:98681800-98691800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:98681800-98693200	Weak transcription	Osteobl	bone
40	chr7:98681800-98693400	Weak transcription	HMEC	breast
41	chr7:98681800-98693800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:98681800-98700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:98682000-98688200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:98682000-98690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:98682600-98693200	Weak transcription	Small Intestine	intestine
46	chr7:98683000-98688400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:98684200-98693400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:98684400-98690000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:98684400-98691600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:98684400-98692000	Weak transcription	Fetal Brain Male	brain

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