Variant report

Variant	rs28533791
Chromosome Location	chr7:98850275-98850276
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98845376..98847977-chr7:98849973..98853220,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57726665	1.00[AMR][1000 genomes]
rs58095534	1.00[AMR][1000 genomes]
rs73709538	1.00[AMR][1000 genomes]
rs73709621	1.00[AMR][1000 genomes]
rs73709635	1.00[AMR][1000 genomes]
rs73709640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98843200-98851800	Weak transcription	NHEK	skin
2	chr7:98845600-98850400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:98846600-98851000	Weak transcription	HMEC	breast
4	chr7:98848800-98850600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:98849600-98850400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:98849600-98850400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:98849600-98850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:98849600-98850600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:98849800-98850400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:98849800-98850400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:98849800-98850400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:98849800-98850400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:98849800-98850400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:98849800-98850400	Bivalent Enhancer	HepG2	liver
15	chr7:98849800-98850600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:98850000-98850400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:98850000-98850400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:98850000-98850400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:98850200-98850400	Active TSS	Fetal Intestine Large	intestine
20	chr7:98850200-98850600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:98850200-98850600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:98850200-98851600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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