Variant report

Variant	rs73709635
Chromosome Location	chr7:98906592-98906593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28533791	1.00[AMR][1000 genomes]
rs57726665	1.00[AMR][1000 genomes]
rs58095534	1.00[AMR][1000 genomes]
rs58625926	1.00[AFR][1000 genomes]
rs73709621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:98893200-98906600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:98899200-98907800	Weak transcription	Aorta	Aorta
4	chr7:98899400-98907000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:98899400-98907200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:98903800-98910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:98904000-98907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:98905800-98907200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:98906000-98906800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:98906000-98906800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:98906000-98906800	Enhancers	HMEC	breast
12	chr7:98906000-98906800	Enhancers	NHEK	skin
13	chr7:98906000-98907400	Enhancers	Stomach Mucosa	stomach
14	chr7:98906200-98906800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:98906200-98907800	Weak transcription	A549	lung
16	chr7:98906200-98908000	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:98906400-98910200	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links