Variant report

Variant	rs58527022
Chromosome Location	chr2:210188208-210188209
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAP2-1	chr2:210188124-210190281	NONHSAT076656

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10185216	0.83[ASN][1000 genomes]
rs12613105	0.96[ASN][1000 genomes]
rs12613165	0.97[ASN][1000 genomes]
rs12619417	0.85[ASN][1000 genomes]
rs12619841	0.96[ASN][1000 genomes]
rs12622639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12623474	0.96[ASN][1000 genomes]
rs1446593	0.97[ASN][1000 genomes]
rs1446594	0.97[ASN][1000 genomes]
rs17725929	0.96[ASN][1000 genomes]
rs17726115	0.96[ASN][1000 genomes]
rs35424736	0.85[ASN][1000 genomes]
rs57091157	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57237067	0.96[ASN][1000 genomes]
rs57340402	0.95[ASN][1000 genomes]
rs57477937	0.96[ASN][1000 genomes]
rs59168245	0.96[ASN][1000 genomes]
rs59222491	0.99[ASN][1000 genomes]
rs60124019	0.96[ASN][1000 genomes]
rs61002714	0.96[ASN][1000 genomes]
rs66484761	0.96[ASN][1000 genomes]
rs66889373	0.97[ASN][1000 genomes]
rs6711968	0.97[ASN][1000 genomes]
rs6746759	0.97[ASN][1000 genomes]
rs67685639	0.96[ASN][1000 genomes]
rs72492734	0.85[ASN][1000 genomes]
rs73056336	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73056341	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73056354	0.99[ASN][1000 genomes]
rs73056366	0.97[ASN][1000 genomes]
rs73060554	0.96[ASN][1000 genomes]
rs73060555	0.96[ASN][1000 genomes]
rs73060558	0.96[ASN][1000 genomes]
rs73060559	0.96[ASN][1000 genomes]
rs73060566	0.85[ASN][1000 genomes]
rs7578275	0.96[ASN][1000 genomes]
rs7592166	0.96[ASN][1000 genomes]
rs7592320	0.93[ASN][1000 genomes]
rs7593140	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006506	chr2:210063871-210212039	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536134	chr2:210063871-210212039	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210172400-210189800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:210173000-210195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:210186400-210189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:210186600-210189800	Weak transcription	Pancreas	Pancrea
5	chr2:210188000-210195400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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