Variant report

Variant	rs58533896
Chromosome Location	chr6:131702787-131702788
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131698297..131700688-chr6:131701676..131704606,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17060193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57003117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58773205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902077	0.91[AMR][1000 genomes]
rs6908007	0.82[AMR][1000 genomes]
rs6920502	0.91[AMR][1000 genomes]
rs73630808	0.91[AMR][1000 genomes]
rs73630811	0.91[AMR][1000 genomes]
rs7767458	0.91[AMR][1000 genomes]
rs9492941	0.91[AMR][1000 genomes]
rs9492942	0.91[AMR][1000 genomes]
rs9492946	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv3434776	chr6:131702620-131703100	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131687600-131705800	Weak transcription	Gastric	stomach
2	chr6:131689000-131705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:131690000-131711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:131690200-131704400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:131700800-131706400	Enhancers	HSMMtube	muscle
6	chr6:131701600-131702800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131701600-131708800	Weak transcription	Osteobl	bone
8	chr6:131701800-131702800	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:131701800-131705200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:131701800-131712400	Enhancers	Fetal Brain Male	brain
11	chr6:131702000-131703000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:131702000-131703000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:131702000-131703200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:131702000-131705000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:131702000-131705000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:131702000-131705400	Enhancers	Fetal Muscle Leg	muscle
17	chr6:131702000-131705800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:131702200-131704000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:131702400-131702800	Enhancers	NHDF-Ad	bronchial
20	chr6:131702400-131703000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:131702400-131703000	Enhancers	Ovary	ovary
22	chr6:131702400-131703000	Enhancers	Spleen	Spleen
23	chr6:131702400-131703200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:131702400-131703200	Enhancers	Lung	lung
25	chr6:131702400-131704000	Enhancers	Brain Angular Gyrus	brain
26	chr6:131702400-131705000	Enhancers	Fetal Lung	lung
27	chr6:131702400-131705200	Enhancers	Fetal Brain Female	brain
28	chr6:131702400-131705800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:131702600-131702800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:131702600-131702800	Weak transcription	Aorta	Aorta
31	chr6:131702600-131703200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:131702600-131703200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:131702600-131703400	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:131702600-131703600	Weak transcription	Brain Germinal Matrix	brain
35	chr6:131702600-131704000	Enhancers	Fetal Stomach	stomach
36	chr6:131702600-131704200	Enhancers	Brain Hippocampus Middle	brain
37	chr6:131702600-131704200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:131702600-131704800	Weak transcription	HSMM	muscle

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