Variant report

Variant	rs9492942
Chromosome Location	chr6:131701585-131701586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17060193	0.91[AMR][1000 genomes]
rs57003117	0.91[AMR][1000 genomes]
rs58533896	0.91[AMR][1000 genomes]
rs58773205	0.91[AMR][1000 genomes]
rs6902077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908007	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6920502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767458	1.00[AMR][1000 genomes]
rs9483269	0.88[AFR][1000 genomes]
rs9492941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131685000-131702400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:131687600-131705800	Weak transcription	Gastric	stomach
3	chr6:131689000-131705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:131690000-131711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:131690200-131704400	Weak transcription	Primary T cells from cord blood	blood
6	chr6:131695400-131702400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:131699000-131701800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:131699000-131702000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:131699000-131702400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:131699000-131702400	Weak transcription	Fetal Brain Female	brain
11	chr6:131699200-131701800	Weak transcription	Fetal Brain Male	brain
12	chr6:131700600-131702000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:131700800-131701600	Enhancers	Osteobl	bone
14	chr6:131700800-131701800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:131700800-131702000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:131700800-131706400	Enhancers	HSMMtube	muscle
17	chr6:131701000-131701600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:131701400-131701800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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