Variant report

Variant	rs58548208
Chromosome Location	chr4:153058688-153058689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58135387	1.00[AFR][1000 genomes]
rs60297362	1.00[AFR][1000 genomes]
rs6822691	0.90[AFR][1000 genomes]
rs6839118	0.93[AFR][1000 genomes]
rs6851721	0.90[AFR][1000 genomes]
rs72736206	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153048200-153059200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:153055400-153060400	Enhancers	Fetal Thymus	thymus
3	chr4:153056200-153060400	Enhancers	Thymus	Thymus
4	chr4:153056400-153059400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:153056600-153059200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr4:153058000-153058800	Enhancers	HSMMtube	muscle
7	chr4:153058400-153059000	Enhancers	Fetal Muscle Leg	muscle
8	chr4:153058600-153059000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:153058600-153059000	Flanking Active TSS	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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