Variant report

Variant	rs72736206
Chromosome Location	chr4:153078016-153078017
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:153071984..153073977-chr4:153076704..153078831,2	K562	blood:
2	chr4:153075644..153078430-chr4:153081633..153084131,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs4466023	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4619874	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58135387	0.80[AFR][1000 genomes]
rs58548208	0.80[AFR][1000 genomes]
rs60297362	0.80[AFR][1000 genomes]
rs6811845	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6811999	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6812249	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6822691	0.90[AFR][1000 genomes]
rs6839118	0.86[AFR][1000 genomes]
rs6842023	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6851721	0.90[AFR][1000 genomes]
rs72734255	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72734257	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734260	0.83[EUR][1000 genomes]
rs72734263	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734264	0.83[EUR][1000 genomes]
rs72734266	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72734273	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734277	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734278	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734279	0.84[EUR][1000 genomes]
rs72734280	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734282	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734284	0.84[EUR][1000 genomes]
rs72734285	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734287	0.85[EUR][1000 genomes]
rs72734288	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734292	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734294	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734295	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734298	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734299	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734302	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72736205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736213	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736216	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736218	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736224	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7682988	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153074800-153080400	Enhancers	Thymus	Thymus
2	chr4:153075000-153079400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:153075000-153079800	Enhancers	Dnd41	blood
4	chr4:153075000-153080400	Enhancers	Fetal Thymus	thymus
5	chr4:153076400-153078800	Weak transcription	Fetal Brain Male	brain
6	chr4:153076400-153079200	Enhancers	Fetal Heart	heart
7	chr4:153076400-153085600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:153077400-153078200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:153077600-153078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:153077600-153078800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:153077600-153078800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:153077600-153079800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr4:153077800-153078200	Enhancers	Right Ventricle	heart
14	chr4:153077800-153078200	Bivalent Enhancer	HSMMtube	muscle
15	chr4:153077800-153078600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr4:153077800-153078600	Enhancers	Left Ventricle	heart
17	chr4:153078000-153081000	Weak transcription	Spleen	Spleen
18	chr4:153078000-153081400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:153078000-153085800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:153078000-153090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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