Variant report

Variant	rs72734263
Chromosome Location	chr4:153037173-153037174
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs4466023	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4619874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6811845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6811999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6812249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6842023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72734257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734260	0.89[EUR][1000 genomes]
rs72734264	0.89[EUR][1000 genomes]
rs72734266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734279	0.91[EUR][1000 genomes]
rs72734280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734284	0.91[EUR][1000 genomes]
rs72734285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734287	0.85[EUR][1000 genomes]
rs72734288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72736205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736206	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736224	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7682988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153029600-153037200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
4	chr4:153032400-153037200	Weak transcription	Fetal Heart	heart
5	chr4:153033000-153037200	Enhancers	Primary T cells from cord blood	blood
6	chr4:153033200-153040800	Enhancers	Fetal Thymus	thymus
7	chr4:153034200-153040000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr4:153035000-153040200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:153035200-153038200	Enhancers	Spleen	Spleen
10	chr4:153035400-153037200	Weak transcription	Right Atrium	heart
11	chr4:153035400-153037400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:153035400-153037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:153035400-153038800	Weak transcription	Psoas Muscle	Psoas
14	chr4:153035400-153040600	Enhancers	Thymus	Thymus
15	chr4:153035800-153038800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:153035800-153038800	Weak transcription	Fetal Brain Male	brain
17	chr4:153035800-153039400	Enhancers	Left Ventricle	heart
18	chr4:153036000-153037400	Enhancers	Fetal Stomach	stomach
19	chr4:153036200-153037200	Enhancers	Adipose Nuclei	Adipose
20	chr4:153036200-153037400	Enhancers	Stomach Smooth Muscle	stomach
21	chr4:153036200-153040600	Enhancers	Fetal Muscle Leg	muscle
22	chr4:153036400-153037400	Enhancers	Primary hematopoietic stem cells	blood
23	chr4:153036400-153037800	Enhancers	Primary B cells from peripheral blood	blood
24	chr4:153036600-153037400	Weak transcription	Gastric	stomach
25	chr4:153036600-153037400	Enhancers	GM12878-XiMat	blood
26	chr4:153036600-153037600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr4:153036600-153037800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr4:153036600-153037800	Enhancers	HUVEC	blood vessel
29	chr4:153036600-153040600	Enhancers	Dnd41	blood
30	chr4:153036800-153037400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:153036800-153037400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:153036800-153037600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr4:153036800-153037600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr4:153036800-153037600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:153036800-153037600	Enhancers	Placenta	Placenta
36	chr4:153036800-153037800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr4:153037000-153037200	Enhancers	Colonic Mucosa	Colon
38	chr4:153037000-153037400	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr4:153037000-153037400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:153037000-153037400	Active TSS	Duodenum Mucosa	Duodenum
41	chr4:153037000-153037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr4:153037000-153037600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr4:153037000-153037600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:153037000-153037600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr4:153037000-153037600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:153037000-153037600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:153037000-153037600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr4:153037000-153037600	Enhancers	Fetal Muscle Trunk	muscle
49	chr4:153037000-153037600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links