Variant report

Variant	rs7682988
Chromosome Location	chr4:153022903-153022904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160A1-6	chr4:153022636-153023087	ENSG00000245954

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4466023	0.93[AMR][1000 genomes]
rs4619874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6811845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6811999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6812249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6842023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72734288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72734302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72736205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72736206	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72736213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72736216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72736218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72736224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153014000-153023400	Weak transcription	Fetal Brain Female	brain
2	chr4:153016400-153023600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:153017200-153027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:153018000-153023400	Weak transcription	HSMMtube	muscle
5	chr4:153020000-153025600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr4:153020200-153024000	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:153020200-153024800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:153020200-153025400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr4:153020400-153023400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:153020600-153024200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr4:153021000-153023600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:153021000-153025200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr4:153021200-153023000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:153021200-153024200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr4:153021200-153024200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:153021200-153024400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr4:153021200-153024800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr4:153021200-153029400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:153021400-153024000	Enhancers	HMEC	breast
20	chr4:153021400-153026200	Enhancers	Spleen	Spleen
21	chr4:153021600-153023000	Enhancers	Adipose Nuclei	Adipose
22	chr4:153021600-153023000	Enhancers	Brain Substantia Nigra	brain
23	chr4:153021600-153023000	Enhancers	Esophagus	oesophagus
24	chr4:153021600-153023000	Flanking Active TSS	Dnd41	blood
25	chr4:153021600-153023800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:153021600-153024200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr4:153021600-153024200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:153021600-153024400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:153021600-153024400	Flanking Active TSS	Fetal Thymus	thymus
30	chr4:153021600-153024800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:153021600-153024800	Flanking Active TSS	Thymus	Thymus
32	chr4:153021800-153024400	Enhancers	NHLF	lung
33	chr4:153021800-153025200	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr4:153022000-153023000	Enhancers	Brain Angular Gyrus	brain
35	chr4:153022000-153024200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:153022000-153025400	Enhancers	Stomach Mucosa	stomach
37	chr4:153022000-153027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:153022000-153027200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:153022200-153023000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:153022200-153023000	Weak transcription	Fetal Intestine Large	intestine
41	chr4:153022200-153024200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:153022200-153024800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:153022200-153026200	Weak transcription	Hela-S3	cervix
44	chr4:153022400-153023400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:153022400-153023400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr4:153022400-153023600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:153022400-153024400	Enhancers	NHEK	skin
48	chr4:153022400-153024800	Enhancers	Primary hematopoietic stem cells	blood
49	chr4:153022400-153024800	Weak transcription	Brain Anterior Caudate	brain
50	chr4:153022400-153024800	Weak transcription	Fetal Muscle Leg	muscle

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