Variant report

Variant	rs72734266
Chromosome Location	chr4:153039864-153039865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:153039555..153041222-chr4:153051699..153054142,2	K562	blood:
2	chr4:153033738..153036508-chr4:153038629..153040300,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs4466023	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4619874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6811845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6811999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6812249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6842023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72734257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734260	0.86[EUR][1000 genomes]
rs72734263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734264	0.86[EUR][1000 genomes]
rs72734273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734279	0.87[EUR][1000 genomes]
rs72734280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734284	0.87[EUR][1000 genomes]
rs72734285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72734287	0.82[EUR][1000 genomes]
rs72734288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72734302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72736205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736206	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72736216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72736218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72736224	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7682988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
3	chr4:153033200-153040800	Enhancers	Fetal Thymus	thymus
4	chr4:153034200-153040000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:153035000-153040200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:153035400-153040600	Enhancers	Thymus	Thymus
7	chr4:153036200-153040600	Enhancers	Fetal Muscle Leg	muscle
8	chr4:153036600-153040600	Enhancers	Dnd41	blood
9	chr4:153037600-153040000	Weak transcription	Lung	lung
10	chr4:153037600-153040200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:153037600-153040600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr4:153038800-153040600	Enhancers	Fetal Muscle Trunk	muscle
13	chr4:153038800-153040600	Enhancers	Psoas Muscle	Psoas
14	chr4:153038800-153040800	Enhancers	Fetal Stomach	stomach
15	chr4:153038800-153041600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:153038800-153043200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:153039200-153040600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:153039400-153040400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:153039400-153040400	Weak transcription	Left Ventricle	heart
20	chr4:153039800-153040200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:153039800-153041400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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