Variant report

Variant	rs72734287
Chromosome Location	chr4:153062212-153062213
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4466023	0.82[EUR][1000 genomes]
rs4619874	0.82[EUR][1000 genomes]
rs6842023	0.88[EUR][1000 genomes]
rs72734257	0.85[EUR][1000 genomes]
rs72734260	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72734263	0.85[EUR][1000 genomes]
rs72734264	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72734266	0.82[EUR][1000 genomes]
rs72734273	0.85[EUR][1000 genomes]
rs72734277	0.85[EUR][1000 genomes]
rs72734278	0.85[EUR][1000 genomes]
rs72734279	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72734280	0.85[EUR][1000 genomes]
rs72734282	0.85[EUR][1000 genomes]
rs72734284	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72734285	0.85[EUR][1000 genomes]
rs72734288	0.88[EUR][1000 genomes]
rs72734291	0.88[EUR][1000 genomes]
rs72734292	0.88[EUR][1000 genomes]
rs72734294	0.88[EUR][1000 genomes]
rs72734295	0.88[EUR][1000 genomes]
rs72734298	0.88[EUR][1000 genomes]
rs72734299	0.88[EUR][1000 genomes]
rs72734302	0.88[EUR][1000 genomes]
rs72736205	0.85[EUR][1000 genomes]
rs72736206	0.85[EUR][1000 genomes]
rs72736213	0.82[EUR][1000 genomes]
rs72736216	0.82[EUR][1000 genomes]
rs72736218	0.82[EUR][1000 genomes]
rs72736224	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153060400-153064800	Weak transcription	Thymus	Thymus
2	chr4:153062000-153065000	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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