Variant report

Variant	rs72734264
Chromosome Location	chr4:153037488-153037489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11099842	1.00[ASN][1000 genomes]
rs11726420	1.00[ASN][1000 genomes]
rs6842023	0.86[EUR][1000 genomes]
rs72734257	0.89[EUR][1000 genomes]
rs72734260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734263	0.89[EUR][1000 genomes]
rs72734266	0.86[EUR][1000 genomes]
rs72734273	0.89[EUR][1000 genomes]
rs72734277	0.89[EUR][1000 genomes]
rs72734278	0.89[EUR][1000 genomes]
rs72734279	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72734280	0.89[EUR][1000 genomes]
rs72734282	0.89[EUR][1000 genomes]
rs72734284	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72734285	0.89[EUR][1000 genomes]
rs72734287	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72734288	0.86[EUR][1000 genomes]
rs72734291	0.86[EUR][1000 genomes]
rs72734292	0.86[EUR][1000 genomes]
rs72734294	0.86[EUR][1000 genomes]
rs72734295	0.86[EUR][1000 genomes]
rs72734298	0.86[EUR][1000 genomes]
rs72734299	0.86[EUR][1000 genomes]
rs72734302	0.86[EUR][1000 genomes]
rs72736205	0.83[EUR][1000 genomes]
rs72736206	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
3	chr4:153033200-153040800	Enhancers	Fetal Thymus	thymus
4	chr4:153034200-153040000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:153035000-153040200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:153035200-153038200	Enhancers	Spleen	Spleen
7	chr4:153035400-153037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:153035400-153038800	Weak transcription	Psoas Muscle	Psoas
9	chr4:153035400-153040600	Enhancers	Thymus	Thymus
10	chr4:153035800-153038800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:153035800-153038800	Weak transcription	Fetal Brain Male	brain
12	chr4:153035800-153039400	Enhancers	Left Ventricle	heart
13	chr4:153036200-153040600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:153036400-153037800	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:153036600-153037600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr4:153036600-153037800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr4:153036600-153037800	Enhancers	HUVEC	blood vessel
18	chr4:153036600-153040600	Enhancers	Dnd41	blood
19	chr4:153036800-153037600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr4:153036800-153037600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr4:153036800-153037600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:153036800-153037600	Enhancers	Placenta	Placenta
23	chr4:153036800-153037800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr4:153037000-153037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:153037000-153037600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr4:153037000-153037600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:153037000-153037600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr4:153037000-153037600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:153037000-153037600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:153037000-153037600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr4:153037000-153037600	Enhancers	Fetal Muscle Trunk	muscle
32	chr4:153037000-153037600	Enhancers	Lung	lung
33	chr4:153037200-153037600	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr4:153037200-153037600	Enhancers	Brain Angular Gyrus	brain
35	chr4:153037200-153037600	Enhancers	Right Atrium	heart
36	chr4:153037200-153037800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:153037400-153037600	Enhancers	Primary B cells from cord blood	blood
38	chr4:153037400-153037600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:153037400-153037600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
40	chr4:153037400-153037600	Enhancers	Duodenum Mucosa	Duodenum
41	chr4:153037400-153037600	Enhancers	Gastric	stomach
42	chr4:153037400-153038200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:153037400-153038800	Weak transcription	Fetal Stomach	stomach
44	chr4:153037400-153039200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:153037400-153039400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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