Variant report

Variant	rs72734260
Chromosome Location	chr4:153035341-153035342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:153033738..153036508-chr4:153038629..153040300,2	MCF-7	breast:
2	chr4:153031366..153033084-chr4:153033664..153036151,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11099842	1.00[ASN][1000 genomes]
rs11726420	1.00[ASN][1000 genomes]
rs6842023	0.86[EUR][1000 genomes]
rs72734257	0.89[EUR][1000 genomes]
rs72734263	0.89[EUR][1000 genomes]
rs72734264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734266	0.86[EUR][1000 genomes]
rs72734273	0.89[EUR][1000 genomes]
rs72734277	0.89[EUR][1000 genomes]
rs72734278	0.89[EUR][1000 genomes]
rs72734279	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72734280	0.89[EUR][1000 genomes]
rs72734282	0.89[EUR][1000 genomes]
rs72734284	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72734285	0.89[EUR][1000 genomes]
rs72734287	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72734288	0.86[EUR][1000 genomes]
rs72734291	0.86[EUR][1000 genomes]
rs72734292	0.86[EUR][1000 genomes]
rs72734294	0.86[EUR][1000 genomes]
rs72734295	0.86[EUR][1000 genomes]
rs72734298	0.86[EUR][1000 genomes]
rs72734299	0.86[EUR][1000 genomes]
rs72734302	0.86[EUR][1000 genomes]
rs72736205	0.83[EUR][1000 genomes]
rs72736206	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153024800-153037000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr4:153028000-153035800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:153029600-153037200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:153031200-153036600	Weak transcription	Dnd41	blood
6	chr4:153031600-153035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:153031600-153036400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:153031600-153036600	Weak transcription	HUVEC	blood vessel
9	chr4:153031600-153036800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
11	chr4:153031800-153035400	Weak transcription	Fetal Brain Male	brain
12	chr4:153031800-153036400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:153032200-153035400	Weak transcription	Thymus	Thymus
14	chr4:153032200-153036200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:153032400-153036000	Weak transcription	Fetal Stomach	stomach
16	chr4:153032400-153037200	Weak transcription	Fetal Heart	heart
17	chr4:153033000-153036600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr4:153033000-153036600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:153033000-153036800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:153033000-153036800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:153033000-153037200	Enhancers	Primary T cells from cord blood	blood
22	chr4:153033200-153036800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:153033200-153037000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr4:153033200-153037000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:153033200-153040800	Enhancers	Fetal Thymus	thymus
26	chr4:153033600-153036400	Weak transcription	Lung	lung
27	chr4:153033600-153036800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:153033800-153036200	Weak transcription	Adipose Nuclei	Adipose
29	chr4:153033800-153036400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:153034200-153035400	Enhancers	Psoas Muscle	Psoas
31	chr4:153034200-153036600	Weak transcription	GM12878-XiMat	blood
32	chr4:153034200-153040000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr4:153034400-153035400	Enhancers	Fetal Muscle Leg	muscle
34	chr4:153034400-153035800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:153034600-153035400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:153034600-153035800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:153034600-153035800	Weak transcription	Left Ventricle	heart
38	chr4:153034600-153036000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr4:153035000-153036200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:153035000-153040200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr4:153035200-153035400	Enhancers	Gastric	stomach
42	chr4:153035200-153035400	Enhancers	Right Atrium	heart
43	chr4:153035200-153037000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:153035200-153038200	Enhancers	Spleen	Spleen

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