Variant report

Variant rs58556096
Chromosome Location chr18:11987415-11987416
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:11982400-11987600 Weak transcription Fetal Heart heart
2 chr18:11982400-11988400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr18:11982400-12005000 Weak transcription Aorta Aorta
4 chr18:11982600-11987800 Weak transcription NHLF lung
5 chr18:11982600-11995600 Weak transcription Primary T cells from cord blood blood
6 chr18:11982600-11995800 Weak transcription Thymus Thymus
7 chr18:11982600-12028600 Weak transcription Small Intestine intestine
8 chr18:11983400-11989000 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr18:11983400-11989200 Enhancers Primary monocytes fromperipheralblood blood
10 chr18:11983400-11989600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr18:11983400-11994000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr18:11983600-11989400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr18:11984000-11989000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr18:11984200-11988200 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr18:11984200-11988400 Weak transcription Fetal Intestine Large intestine
16 chr18:11984200-11989800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr18:11984200-11993600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr18:11984200-11994600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr18:11984400-11987600 Weak transcription Duodenum Mucosa Duodenum
20 chr18:11984400-11988400 Weak transcription Esophagus oesophagus
21 chr18:11984400-11988800 Weak transcription Colonic Mucosa Colon
22 chr18:11984400-11989200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr18:11984400-11989200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr18:11984400-11989400 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr18:11984400-11989600 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr18:11984400-11990000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr18:11984400-11990400 Weak transcription Muscle Satellite Cultured Cells --
28 chr18:11984400-11993400 Weak transcription Lung lung
29 chr18:11984400-11994200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr18:11984400-11994200 Weak transcription NHEK skin
31 chr18:11984400-11995000 Weak transcription GM12878-XiMat blood
32 chr18:11984600-11988400 Weak transcription HSMMtube muscle
33 chr18:11984600-11988600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr18:11984600-11989800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr18:11985200-11991200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr18:11985600-11987600 Strong transcription Fetal Stomach stomach
37 chr18:11985600-11987800 Strong transcription Fetal Intestine Small intestine
38 chr18:11986000-11987600 Enhancers H1 Cell Line embryonic stem cell
39 chr18:11986000-11987600 Weak transcription K562 blood
40 chr18:11986000-11990400 Weak transcription Fetal Kidney kidney
41 chr18:11986000-11995600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr18:11986200-11987800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr18:11986400-11988800 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr18:11986400-11989200 Weak transcription Gastric stomach
45 chr18:11986400-11990000 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr18:11986400-11994600 Weak transcription Liver Liver
47 chr18:11986600-11987600 Enhancers Primary hematopoietic stem cells blood
48 chr18:11986600-11987600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr18:11986600-11988000 Flanking Active TSS Skeletal Muscle Male skeletal muscle
50 chr18:11986600-11988600 Weak transcription Left Ventricle heart

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