Variant report

Variant	rs58577972
Chromosome Location	chr16:71645514-71645515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71644641..71645674-chr16:71679043..71680015,5	MCF-7	breast:
2	chr16:71446366..71447179-chr16:71644599..71645567,3	K562	blood:
3	chr16:71586592..71587218-chr16:71644906..71645667,2	MCF-7	breast:
4	chr16:71598501..71600044-chr16:71644493..71645682,11	MCF-7	breast:
5	chr16:71567921..71569617-chr16:71645011..71646646,2	MCF-7	breast:
6	chr16:71645006..71646699-chr16:71648502..71650487,2	MCF-7	breast:
7	chr16:71645072..71647361-chr16:71660009..71661728,2	MCF-7	breast:
8	chr16:71596573..71599590-chr16:71642907..71646466,3	MCF-7	breast:
9	chr16:71540507..71541058-chr16:71644975..71645549,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000260886	Chromatin interaction
ENSG00000252339	Chromatin interaction
ENSG00000260593	Chromatin interaction
ENSG00000140832	Chromatin interaction
ENSG00000157429	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58631676	1.00[AMR][1000 genomes]
rs59676185	1.00[AMR][1000 genomes]
rs59786870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027273	1.00[AMR][1000 genomes]
rs74027275	1.00[AMR][1000 genomes]
rs74027296	1.00[AMR][1000 genomes]
rs74027297	1.00[AMR][1000 genomes]
rs74027299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3430225	chr16:71633500-71661205	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv962218	chr16:71645202-71727606	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71644200-71647600	Weak transcription	Right Atrium	heart
2	chr16:71644400-71645600	Enhancers	Primary B cells from peripheral blood	blood
3	chr16:71644800-71645600	Flanking Active TSS	HepG2	liver
4	chr16:71644800-71645800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr16:71644800-71645800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr16:71644800-71646000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr16:71645000-71645800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr16:71645200-71645600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr16:71645200-71645600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr16:71645200-71645600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr16:71645200-71646000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr16:71645400-71645600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr16:71645400-71645600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr16:71645400-71645600	Enhancers	Brain Cingulate Gyrus	brain
15	chr16:71645400-71645600	Flanking Active TSS	A549	lung
16	chr16:71645400-71645800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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