Variant report

Variant	rs74027261
Chromosome Location	chr16:71627080-71627081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58577972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58631676	1.00[AMR][1000 genomes]
rs59676185	1.00[AMR][1000 genomes]
rs59786870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74027273	1.00[AMR][1000 genomes]
rs74027275	1.00[AMR][1000 genomes]
rs74027296	1.00[AMR][1000 genomes]
rs74027297	1.00[AMR][1000 genomes]
rs74027299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71624200-71627200	Enhancers	HepG2	liver
2	chr16:71627000-71627400	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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