Variant report

Variant	rs58590827
Chromosome Location	chr8:125159195-125159196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ARF1P3	TF binding region
ENSG00000253227	Chromatin interaction
ENSG00000253885	Chromatin interaction
ENSG00000250727	Chromatin interaction
ENSG00000245149	Chromatin interaction
ENSG00000170881	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58067650	0.88[AFR][1000 genomes]
rs59006162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59571259	1.00[AMR][1000 genomes]
rs60439335	0.88[AFR][1000 genomes]
rs61048327	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125150400-125165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:125151200-125160000	Weak transcription	Fetal Intestine Small	intestine
3	chr8:125151400-125159200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:125154000-125159200	Weak transcription	A549	lung
5	chr8:125154200-125159200	Weak transcription	NH-A	brain
6	chr8:125154200-125165600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:125154400-125159800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:125155200-125159400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:125158000-125159400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:125158000-125159600	Weak transcription	HUVEC	blood vessel
11	chr8:125158000-125160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:125158200-125165800	Weak transcription	Spleen	Spleen
13	chr8:125158800-125159400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr8:125159000-125159200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:125159000-125159600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:125159000-125160400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:125159000-125160600	Enhancers	HMEC	breast
18	chr8:125159000-125160800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:125159000-125160800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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