Variant report

Variant	rs58598824
Chromosome Location	chr8:110588847-110588848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110549483..110552417-chr8:110588037..110589778,2	MCF-7	breast:
2	chr8:110582739..110585482-chr8:110585928..110589559,4	MCF-7	breast:
3	chr8:110588326..110591138-chr8:110601427..110604344,2	MCF-7	breast:
4	chr8:110588060..110591053-chr8:110594927..110598515,3	MCF-7	breast:
5	chr8:110587376..110590221-chr8:110656564..110658420,2	MCF-7	breast:
6	chr8:110587920..110590161-chr8:110647587..110650082,2	MCF-7	breast:
7	chr8:110572447..110573999-chr8:110587625..110589543,2	MCF-7	breast:
8	chr8:110551565..110553689-chr8:110587903..110590211,2	MCF-7	breast:
9	chr8:110586558..110591065-chr8:110591815..110595528,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

rs_ID	r²[population]
rs73700659	0.98[AFR][1000 genomes]
rs73700660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702897	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
3	chr8:110567000-110593200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:110570400-110593600	Weak transcription	Fetal Brain Male	brain
5	chr8:110571000-110589200	Weak transcription	Hela-S3	cervix
6	chr8:110571000-110589200	Weak transcription	NH-A	brain
7	chr8:110571600-110591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:110571600-110592800	Weak transcription	Small Intestine	intestine
9	chr8:110572000-110589000	Weak transcription	Aorta	Aorta
10	chr8:110576200-110590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:110577000-110589400	Weak transcription	K562	blood
12	chr8:110577400-110590800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:110579600-110590400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:110580000-110589400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:110580000-110589600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:110583800-110590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:110583800-110591600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:110584200-110589600	Weak transcription	HMEC	breast
20	chr8:110584600-110589400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:110585000-110591200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:110586000-110598800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:110586600-110590000	Enhancers	Fetal Lung	lung
24	chr8:110586600-110592400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:110587000-110589400	Weak transcription	Brain Angular Gyrus	brain
26	chr8:110587000-110591600	Enhancers	Adipose Nuclei	Adipose
27	chr8:110587000-110593200	Weak transcription	NHDF-Ad	bronchial
28	chr8:110587400-110591200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:110587400-110592800	Weak transcription	GM12878-XiMat	blood
30	chr8:110587400-110593200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
31	chr8:110587600-110590000	Enhancers	Fetal Heart	heart
32	chr8:110587600-110590200	Genic enhancers	Liver	Liver
33	chr8:110587800-110589600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:110587800-110589600	Weak transcription	Spleen	Spleen
35	chr8:110587800-110590000	Enhancers	HSMMtube	muscle
36	chr8:110587800-110590600	Weak transcription	Colonic Mucosa	Colon
37	chr8:110587800-110590800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr8:110587800-110590800	Enhancers	HUVEC	blood vessel
39	chr8:110587800-110605800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:110588000-110589400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr8:110588000-110589600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:110588000-110590000	Weak transcription	Fetal Intestine Large	intestine
43	chr8:110588000-110590000	Weak transcription	Fetal Stomach	stomach
44	chr8:110588000-110590000	Weak transcription	Gastric	stomach
45	chr8:110588000-110590200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr8:110588000-110590400	Weak transcription	Fetal Brain Female	brain
47	chr8:110588000-110590600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:110588000-110591200	Weak transcription	Right Ventricle	heart
49	chr8:110588000-110591200	Weak transcription	Stomach Mucosa	stomach
50	chr8:110588000-110592000	Weak transcription	Brain Inferior Temporal Lobe	brain

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