Variant report

Variant	rs73702894
Chromosome Location	chr8:110598211-110598212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110595759..110598292-chr8:110656229..110657746,2	MCF-7	breast:
2	chr8:110588060..110591053-chr8:110594927..110598515,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248050	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58598824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700659	0.98[AFR][1000 genomes]
rs73700660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702897	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:110586000-110598800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:110587800-110605800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:110588000-110600600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:110588200-110601600	Weak transcription	Left Ventricle	heart
7	chr8:110589200-110598600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:110589800-110601600	Weak transcription	Right Atrium	heart
9	chr8:110590000-110605600	Weak transcription	K562	blood
10	chr8:110590200-110654800	Weak transcription	Lung	lung
11	chr8:110591200-110601600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:110591600-110598400	Weak transcription	Right Ventricle	heart
13	chr8:110591600-110599400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:110591600-110601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:110591600-110609400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:110592000-110601400	Weak transcription	Brain Angular Gyrus	brain
17	chr8:110592200-110601600	Weak transcription	NHEK	skin
18	chr8:110592200-110604600	Weak transcription	Gastric	stomach
19	chr8:110592400-110601800	Weak transcription	Brain Germinal Matrix	brain
20	chr8:110593200-110598600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:110593600-110601400	Weak transcription	HMEC	breast
22	chr8:110594600-110598800	Enhancers	Pancreas	Pancrea
23	chr8:110594800-110598400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:110594800-110606000	Weak transcription	Fetal Brain Male	brain
25	chr8:110595600-110601600	Weak transcription	Psoas Muscle	Psoas
26	chr8:110596200-110601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:110596200-110601600	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:110596600-110598400	Strong transcription	Fetal Brain Female	brain
29	chr8:110596600-110599200	Enhancers	Colon Smooth Muscle	Colon
30	chr8:110596800-110608400	Enhancers	Fetal Intestine Large	intestine
31	chr8:110597000-110598400	Strong transcription	Brain Anterior Caudate	brain
32	chr8:110597000-110598600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:110597000-110598600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr8:110597200-110598400	Genic enhancers	Liver	Liver
35	chr8:110597200-110601000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:110597200-110601400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:110597400-110599000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr8:110597600-110598400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:110597600-110598400	Enhancers	Esophagus	oesophagus
40	chr8:110597600-110598600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr8:110597600-110598600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr8:110597800-110598600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr8:110597800-110599000	Enhancers	Brain Hippocampus Middle	brain
44	chr8:110597800-110601400	Weak transcription	Adipose Nuclei	Adipose
45	chr8:110597800-110608400	Enhancers	Fetal Intestine Small	intestine
46	chr8:110598000-110598400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:110598000-110598400	Enhancers	Brain Substantia Nigra	brain
48	chr8:110598000-110598400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr8:110598000-110598400	Weak transcription	A549	lung
50	chr8:110598000-110598800	Enhancers	Stomach Mucosa	stomach

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