Variant report

Variant	rs58616642
Chromosome Location	chr12:103663526-103663527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507162	0.81[AMR][1000 genomes]
rs10860976	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10860979	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10860981	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10860982	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11111517	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111520	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11111522	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111525	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111527	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111528	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111529	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111530	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111531	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11111532	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12228711	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17033705	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4764731	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4764950	0.85[ASN][1000 genomes]
rs57342939	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59259889	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6539067	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7294776	0.93[EUR][1000 genomes]
rs7954263	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7975056	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975641	chr12:103663103-103667663	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103662600-103663600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:103662800-103666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:103663000-103663800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr12:103663000-103663800	Bivalent Enhancer	Dnd41	blood
5	chr12:103663200-103663600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr12:103663200-103663800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr12:103663200-103664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:103663400-103664000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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