Variant report
| Variant | rs10507162 |
|---|---|
| Chromosome Location | chr12:103642150-103642151 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:103349887..103352220-chr12:103642036..103643565,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171759 | Chromatin interaction |
| ENSG00000139352 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10860976 | 0.81[AMR][1000 genomes] |
| rs10860979 | 0.81[AMR][1000 genomes] |
| rs10860981 | 0.81[AMR][1000 genomes] |
| rs10860982 | 0.81[AMR][1000 genomes] |
| rs11111517 | 0.81[AMR][1000 genomes] |
| rs11111520 | 0.81[AMR][1000 genomes] |
| rs11111522 | 0.81[AMR][1000 genomes] |
| rs11111525 | 0.81[AMR][1000 genomes] |
| rs11111527 | 0.81[AMR][1000 genomes] |
| rs11111528 | 0.81[AMR][1000 genomes] |
| rs11111529 | 0.81[AMR][1000 genomes] |
| rs11111531 | 0.81[AMR][1000 genomes] |
| rs11111532 | 0.81[AMR][1000 genomes] |
| rs12227177 | 1.00[CEU][hapmap] |
| rs12228711 | 0.81[AMR][1000 genomes] |
| rs12229038 | 1.00[CEU][hapmap] |
| rs12230008 | 1.00[CEU][hapmap] |
| rs1343985 | 1.00[CEU][hapmap] |
| rs1520189 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1554394 | 1.00[CEU][hapmap];0.93[JPT][hapmap] |
| rs17033627 | 0.85[JPT][hapmap] |
| rs17033705 | 0.81[AMR][1000 genomes] |
| rs2139557 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
| rs2888728 | 1.00[CEU][hapmap] |
| rs4147493 | 1.00[CEU][hapmap] |
| rs4764731 | 0.81[AMR][1000 genomes] |
| rs57342939 | 0.81[AMR][1000 genomes] |
| rs58616642 | 0.81[AMR][1000 genomes] |
| rs59259889 | 0.81[AMR][1000 genomes] |
| rs6539067 | 0.81[AMR][1000 genomes] |
| rs7132491 | 1.00[CEU][hapmap] |
| rs7954263 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832501 | chr12:103463927-103648825 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
