Variant report

Variant	rs2888728
Chromosome Location	chr12:103766639-103766640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103639814..103640778-chr12:103766634..103767396,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10507162	1.00[CEU][hapmap]
rs10860976	0.82[EUR][1000 genomes]
rs10860979	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10860981	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10860982	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111517	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11111520	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111522	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111525	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111527	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111528	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111529	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111530	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111531	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11111532	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11111535	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12227177	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12228711	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12229038	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12230008	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343985	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1343986	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1554394	1.00[CEU][hapmap]
rs17033705	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2139557	1.00[CEU][hapmap]
rs4147493	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4304883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4764731	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4764950	0.82[ASN][1000 genomes]
rs4764953	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57342939	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57747432	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59259889	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60563650	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6539067	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7132491	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7294776	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7954263	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7975056	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7980492	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103765800-103766800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:103765800-103767800	Enhancers	Thymus	Thymus
5	chr12:103765800-103768400	Enhancers	Dnd41	blood
6	chr12:103766400-103767200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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