Variant report

Variant	rs2139557
Chromosome Location	chr12:103648214-103648215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10507162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10860976	0.89[GIH][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10860979	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10860981	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10860982	0.83[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11111517	0.83[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11111520	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11111522	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111525	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111527	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111528	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111529	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111530	0.89[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs11111531	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111532	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11111535	0.81[CHD][hapmap];0.82[GIH][hapmap]
rs12227177	1.00[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.81[EUR][1000 genomes]
rs12228711	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12229038	1.00[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.81[EUR][1000 genomes]
rs12230008	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1343985	1.00[CEU][hapmap]
rs1520189	0.93[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1554394	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs17033627	0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs17033705	0.89[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2888728	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4147493	1.00[CEU][hapmap];0.80[CHD][hapmap];0.83[GIH][hapmap];0.81[EUR][1000 genomes]
rs4304883	0.81[EUR][1000 genomes]
rs4764731	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4764953	0.81[EUR][1000 genomes]
rs57342939	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58616642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59259889	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60563650	0.81[EUR][1000 genomes]
rs6539067	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7132491	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7294776	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs7954263	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7975056	0.82[EUR][1000 genomes]
rs7980492	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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