Variant report

Variant	rs58620732
Chromosome Location	chr15:56277154-56277155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56276877..56278529-chr15:56290959..56293005,2	MCF-7	breast:
2	chr15:56275489..56279024-chr15:56279462..56282619,5	K562	blood:
3	chr15:56275489..56278398-chr15:56279462..56282619,4	K562	blood:
4	chr15:56272827..56275263-chr15:56276968..56278689,2	MCF-7	breast:
5	chr15:56274993..56280197-chr15:56282390..56286830,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60050804	0.81[AFR][1000 genomes]
rs73420363	0.86[AFR][1000 genomes]
rs73420366	1.00[AFR][1000 genomes]
rs73420386	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv457160	chr15:56273446-56320235	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv569544	chr15:56273446-56320235	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
7	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
8	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
9	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56229600-56282600	Weak transcription	NHLF	lung
2	chr15:56231400-56284200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:56236800-56282800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:56248200-56285200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56251600-56281600	Weak transcription	Osteobl	bone
6	chr15:56253600-56282400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:56257600-56281600	Weak transcription	Fetal Intestine Large	intestine
8	chr15:56257600-56283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:56257600-56283800	Weak transcription	Primary T cells from cord blood	blood
10	chr15:56263800-56282400	Weak transcription	Fetal Intestine Small	intestine
11	chr15:56269400-56282400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:56270400-56281600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:56272600-56284200	Weak transcription	Lung	lung
14	chr15:56272800-56281600	Weak transcription	Psoas Muscle	Psoas
15	chr15:56273000-56281600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:56273000-56283000	Weak transcription	HSMMtube	muscle
17	chr15:56274000-56281600	Weak transcription	HSMM	muscle
18	chr15:56274400-56283800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:56274400-56283800	Weak transcription	NH-A	brain
20	chr15:56274400-56284000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:56274600-56278000	Weak transcription	Hela-S3	cervix
22	chr15:56274800-56282800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:56274800-56282800	Weak transcription	A549	lung
24	chr15:56275400-56283000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:56275600-56284000	Weak transcription	Aorta	Aorta
26	chr15:56275600-56284200	Weak transcription	Left Ventricle	heart
27	chr15:56276000-56277600	Enhancers	HUVEC	blood vessel
28	chr15:56276200-56277400	Enhancers	NHEK	skin
29	chr15:56276400-56277400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:56276400-56277800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:56276400-56285000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:56276600-56277600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:56276600-56282800	Weak transcription	NHDF-Ad	bronchial
34	chr15:56276600-56284000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:56276800-56277200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:56276800-56277200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:56276800-56278600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:56276800-56282800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:56277000-56277200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:56277000-56277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:56277000-56283600	Weak transcription	HMEC	breast

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