Variant report

Variant	rs58623923
Chromosome Location	chr11:94133618-94133619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10466369	0.90[AMR][1000 genomes]
rs13447578	0.81[AFR][1000 genomes]
rs13447593	0.88[AFR][1000 genomes]
rs13447637	0.88[AFR][1000 genomes]
rs13447693	0.86[AFR][1000 genomes]
rs16920267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920521	0.88[AFR][1000 genomes]
rs58885207	0.80[AMR][1000 genomes]
rs59895133	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61734490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102892	0.88[AFR][1000 genomes]
rs7102955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112263	0.88[AFR][1000 genomes]
rs7937667	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2621348	chr11:94133614-94133618	Bivalent Enhancer Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94132600-94135200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
2	chr11:94132800-94134800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
3	chr11:94133000-94133800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:94133000-94135000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
5	chr11:94133200-94133800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:94133200-94134000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:94133200-94134200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:94133400-94133800	Bivalent Enhancer	Fetal Stomach	stomach
9	chr11:94133400-94134000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:94133400-94134000	Bivalent Enhancer	HUVEC	blood vessel
11	chr11:94133400-94135000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr11:94133600-94133800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr11:94133600-94133800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
14	chr11:94133600-94134000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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