Variant report
| Variant | rs16920281 |
|---|---|
| Chromosome Location | chr11:94130485-94130486 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10466369 | 0.90[AMR][1000 genomes] |
| rs11020824 | 0.81[LWK][hapmap];1.00[MEX][hapmap] |
| rs11574858 | 0.81[LWK][hapmap] |
| rs12284009 | 0.84[LWK][hapmap];1.00[MEX][hapmap] |
| rs12294255 | 1.00[MEX][hapmap] |
| rs13447578 | 1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs13447593 | 0.88[AFR][1000 genomes] |
| rs13447637 | 0.88[AFR][1000 genomes] |
| rs13447693 | 0.86[AFR][1000 genomes] |
| rs16920267 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16920521 | 0.88[AFR][1000 genomes] |
| rs58623923 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58885207 | 0.80[AMR][1000 genomes] |
| rs59895133 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs61734490 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7102892 | 0.88[AFR][1000 genomes] |
| rs7102955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7112263 | 0.88[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7936320 | 1.00[MEX][hapmap] |
| rs7937667 | 0.83[AFR][1000 genomes] |
| rs7946384 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523083 | chr11:93962121-94150790 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832233 | chr11:93981434-94158471 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:94119600-94132400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
