Variant report

Variant	rs58640994
Chromosome Location	chr9:116527681-116527682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12683399	0.80[AMR][1000 genomes]
rs16908855	0.81[ASN][1000 genomes]
rs16908863	0.81[ASN][1000 genomes]
rs56929719	0.97[EUR][1000 genomes]
rs59524940	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60726370	0.97[EUR][1000 genomes]
rs61265469	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73548453	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73548463	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73548490	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73550914	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116527600-116527800	Bivalent Enhancer	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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