Variant report

Variant	rs12683399
Chromosome Location	chr9:116542871-116542872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12684436	0.98[ASN][1000 genomes]
rs16909256	0.85[ASN][1000 genomes]
rs2418252	0.90[ASN][1000 genomes]
rs4979284	0.91[ASN][1000 genomes]
rs58640994	0.80[AMR][1000 genomes]
rs59904532	0.98[ASN][1000 genomes]
rs62558196	0.98[ASN][1000 genomes]
rs7024705	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs7037774	0.89[ASN][1000 genomes]
rs7853307	0.90[ASN][1000 genomes]
rs7866201	0.91[ASN][1000 genomes]
rs913079	0.88[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney
2	chr9:116542600-116543400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:116542600-116543800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:116542800-116543200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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