Variant report

Variant	rs4979284
Chromosome Location	chr9:116551303-116551304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12683399	0.91[ASN][1000 genomes]
rs12684436	0.90[ASN][1000 genomes]
rs2418252	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59904532	0.90[ASN][1000 genomes]
rs62558196	0.90[ASN][1000 genomes]
rs7024705	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037774	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853307	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866201	1.00[ASN][1000 genomes]
rs913079	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney
2	chr9:116549800-116551800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:116550000-116551800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
5	chr9:116550400-116551400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:116550400-116551400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:116550400-116551400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr9:116550400-116551400	Enhancers	Fetal Lung	lung
9	chr9:116550400-116551400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:116550400-116551400	Enhancers	Fetal Stomach	stomach
11	chr9:116550600-116551400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr9:116550600-116552400	Bivalent Enhancer	Fetal Brain Male	brain
13	chr9:116551000-116551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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