Variant report

Variant	rs913079
Chromosome Location	chr9:116556332-116556333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12683399	0.90[ASN][1000 genomes]
rs12684436	0.89[ASN][1000 genomes]
rs2418252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979284	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59904532	0.89[ASN][1000 genomes]
rs62558196	0.89[ASN][1000 genomes]
rs6478042	0.87[EUR][1000 genomes]
rs7024705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037774	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7853307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866201	0.89[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116555800-116556400	Enhancers	Fetal Muscle Leg	muscle
2	chr9:116555800-116557000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:116555800-116557000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:116555800-116557800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:116556000-116556800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:116556000-116557200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:116556200-116556600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:116556200-116556600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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