Variant report

Variant	rs58641485
Chromosome Location	chr3:136181054-136181055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16843978	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844056	0.84[AFR][1000 genomes]
rs3913715	0.84[AMR][1000 genomes]
rs3931416	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55763637	0.83[EUR][1000 genomes]
rs55848312	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56083120	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095774	0.88[AMR][1000 genomes]
rs56218376	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57681357	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58636237	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014495	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60270684	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66470158	0.82[EUR][1000 genomes]
rs66494666	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66637842	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66902780	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66973954	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67082054	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67230667	0.99[EUR][1000 genomes]
rs67281610	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67303976	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67305360	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67389407	0.84[AMR][1000 genomes]
rs67525027	0.84[AMR][1000 genomes]
rs67621498	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67663578	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769582	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6773495	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67794070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67888773	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67902591	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67963055	0.84[AMR][1000 genomes]
rs67971203	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73224201	0.96[EUR][1000 genomes]
rs73226130	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228025	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228037	1.00[ASN][1000 genomes]
rs73228040	0.82[EUR][1000 genomes]
rs7625592	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7636806	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650075	0.80[AMR][1000 genomes]
rs7652176	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136173000-136181400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:136176400-136186000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:136176400-136190600	Weak transcription	Gastric	stomach
4	chr3:136176400-136194200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:136176400-136194400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:136176400-136194400	Weak transcription	HSMM	muscle
7	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:136176600-136183400	Weak transcription	Aorta	Aorta
9	chr3:136176600-136190400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:136176600-136195000	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:136176600-136195000	Weak transcription	Spleen	Spleen
12	chr3:136176600-136196600	Weak transcription	HUVEC	blood vessel
13	chr3:136176600-136212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:136176600-136222800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:136176600-136224200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:136176600-136224400	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:136176600-136231800	Weak transcription	Psoas Muscle	Psoas
18	chr3:136176600-136240000	Weak transcription	HMEC	breast
19	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:136176800-136181200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:136176800-136183000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:136176800-136183000	Weak transcription	Right Ventricle	heart
23	chr3:136176800-136183600	Weak transcription	NH-A	brain
24	chr3:136176800-136189800	Weak transcription	Liver	Liver
25	chr3:136176800-136190000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:136176800-136190600	Weak transcription	Left Ventricle	heart
27	chr3:136176800-136190600	Weak transcription	Pancreas	Pancrea
28	chr3:136176800-136191600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:136176800-136193400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:136176800-136193400	Weak transcription	Esophagus	oesophagus
31	chr3:136176800-136193600	Weak transcription	Ovary	ovary
32	chr3:136176800-136194400	Weak transcription	Brain Anterior Caudate	brain
33	chr3:136176800-136194400	Weak transcription	Brain Germinal Matrix	brain
34	chr3:136176800-136194800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:136176800-136205800	Weak transcription	Small Intestine	intestine
36	chr3:136176800-136228000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
38	chr3:136177000-136183200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:136177000-136190400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:136177000-136191800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:136177200-136183000	Weak transcription	Lung	lung
42	chr3:136177200-136183200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:136177200-136236400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:136177400-136183000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:136177400-136183000	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:136177400-136183000	Weak transcription	Thymus	Thymus
47	chr3:136177400-136190200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr3:136177400-136190600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:136177400-136191600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr3:136177400-136198400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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