Variant report

Variant	rs7652176
Chromosome Location	chr3:136091857-136091858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10513002	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067714	0.96[EUR][1000 genomes]
rs16843879	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843978	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17199880	0.96[EUR][1000 genomes]
rs17199978	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17265675	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17266364	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913715	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4125861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654524	0.81[AMR][1000 genomes]
rs55848312	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56057807	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095774	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56264828	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336182	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58641485	0.84[AMR][1000 genomes]
rs66637842	1.00[ASN][1000 genomes]
rs67230667	1.00[ASN][1000 genomes]
rs67389407	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67452583	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67525027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67677899	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67692166	0.85[EUR][1000 genomes]
rs6769582	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773604	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67963055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67971203	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6808143	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73224201	1.00[ASN][1000 genomes]
rs7625592	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7650075	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7652176	IL20RB	cis	Artery Tibial	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
2	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
5	chr3:136063400-136139000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:136063400-136139000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:136063600-136097000	Weak transcription	Colonic Mucosa	Colon
8	chr3:136063600-136105600	Weak transcription	Gastric	stomach
9	chr3:136063600-136110600	Weak transcription	Small Intestine	intestine
10	chr3:136063600-136139200	Weak transcription	Pancreas	Pancrea
11	chr3:136063800-136095200	Weak transcription	Lung	lung
12	chr3:136065400-136097200	Weak transcription	HepG2	liver
13	chr3:136067600-136109000	Weak transcription	HUVEC	blood vessel
14	chr3:136068600-136103800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:136069400-136121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:136069600-136107400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:136069600-136138800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:136069600-136139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:136069800-136106600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:136069800-136118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:136069800-136159600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:136070400-136095000	Weak transcription	NH-A	brain
23	chr3:136070600-136101000	Weak transcription	Right Ventricle	heart
24	chr3:136070600-136105800	Weak transcription	Psoas Muscle	Psoas
25	chr3:136070800-136095200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:136070800-136096800	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:136070800-136096800	Weak transcription	HSMMtube	muscle
28	chr3:136070800-136099600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:136070800-136112200	Weak transcription	Aorta	Aorta
30	chr3:136070800-136121400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:136072600-136098800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:136072800-136097000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr3:136072800-136100400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:136073000-136093800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:136075000-136137800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:136075400-136093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:136075400-136093800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:136075400-136108000	Weak transcription	Fetal Brain Female	brain
39	chr3:136075600-136094200	Weak transcription	Left Ventricle	heart
40	chr3:136075600-136097000	Weak transcription	Fetal Lung	lung
41	chr3:136075600-136105800	Weak transcription	Ovary	ovary
42	chr3:136075800-136094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:136075800-136099000	Weak transcription	Fetal Muscle Leg	muscle
44	chr3:136075800-136160200	Weak transcription	Brain Germinal Matrix	brain
45	chr3:136078200-136096000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:136079400-136174200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:136081200-136093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:136081200-136118800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:136081400-136093600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:136081400-136095200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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